#Steps 1-6

1.Load the R packages we will use.

library(tidyverse)
library(echarts4r)  #install this package before using
library(hrbrthemes) #install this package before using

Read the data in the files, drug_cos.csv, health_cos.csv in to R and assign to the variables drug_cos and health_cos, respectively

drug_cos  <- read_csv("https://estanny.com/static/week6/drug_cos.csv")
health_cos  <- read_csv("https://estanny.com/static/week6/health_cos.csv")

Use glimpse to get a glimpse of the data

drug_cos %>% glimpse()

Rows: 104
Columns: 9
$ ticker       <chr> "ZTS", "ZTS", "ZTS", "ZTS", "ZTS", "ZTS", "ZTS…
$ name         <chr> "Zoetis Inc", "Zoetis Inc", "Zoetis Inc", "Zoe…
$ location     <chr> "New Jersey; U.S.A", "New Jersey; U.S.A", "New…
$ ebitdamargin <dbl> 0.149, 0.217, 0.222, 0.238, 0.182, 0.335, 0.36…
$ grossmargin  <dbl> 0.610, 0.640, 0.634, 0.641, 0.635, 0.659, 0.66…
$ netmargin    <dbl> 0.058, 0.101, 0.111, 0.122, 0.071, 0.168, 0.16…
$ ros          <dbl> 0.101, 0.171, 0.176, 0.195, 0.140, 0.286, 0.32…
$ roe          <dbl> 0.069, 0.113, 0.612, 0.465, 0.285, 0.587, 0.48…
$ year         <dbl> 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018…

health_cos %>% glimpse()

Rows: 464
Columns: 11
$ ticker      <chr> "ZTS", "ZTS", "ZTS", "ZTS", "ZTS", "ZTS", "ZTS"…
$ name        <chr> "Zoetis Inc", "Zoetis Inc", "Zoetis Inc", "Zoet…
$ revenue     <dbl> 4233000000, 4336000000, 4561000000, 4785000000,…
$ gp          <dbl> 2581000000, 2773000000, 2892000000, 3068000000,…
$ rnd         <dbl> 427000000, 409000000, 399000000, 396000000, 364…
$ netincome   <dbl> 245000000, 436000000, 504000000, 583000000, 339…
$ assets      <dbl> 5711000000, 6262000000, 6558000000, 6588000000,…
$ liabilities <dbl> 1975000000, 2221000000, 5596000000, 5251000000,…
$ marketcap   <dbl> NA, NA, 16345223371, 21572007994, 23860348635, …
$ year        <dbl> 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018,…
$ industry    <chr> "Drug Manufacturers - Specialty & Generic", "Dr…

Which variables are the same in both data sets

names_drug  <- drug_cos  %>%  names() 
names_health  <- health_cos  %>%  names() 
intersect(names_drug, names_health)

[1] "ticker" "name"   "year"

Select subset of variables to work with

For drug_cos select (in this order): ticker, year, grossmargin

Extract observations for 2018

Assign output to drug_subset

For health_cos select (in this order): ticker, year, revenue, gp, industry

Extract observations for 2018

Assign output to health_subset

drug_subset  <- drug_cos  %>% 
  select(ticker, year, grossmargin)  %>% 
  filter(year == 2018)

health_subset  <- health_cos  %>%
  select(ticker, year, revenue, gp, industry)  %>% 
  filter(year == 2018)

Keep all the rows and columns drug_subset join with columns in health_subset

drug_subset  %>% left_join(health_subset)

# A tibble: 13 x 6
   ticker  year grossmargin   revenue        gp industry              
   <chr>  <dbl>       <dbl>     <dbl>     <dbl> <chr>                 
 1 ZTS     2018       0.672   5.82e 9   3.91e 9 Drug Manufacturers - …
 2 PRGO    2018       0.387   4.73e 9   1.83e 9 Drug Manufacturers - …
 3 PFE     2018       0.79    5.36e10   4.24e10 Drug Manufacturers - …
 4 MYL     2018       0.35    1.14e10   4.00e 9 Drug Manufacturers - …
 5 MRK     2018       0.681   4.23e10   2.88e10 Drug Manufacturers - …
 6 LLY     2018       0.738   2.46e10   1.81e10 Drug Manufacturers - …
 7 JNJ     2018       0.668   8.16e10   5.45e10 Drug Manufacturers - …
 8 GILD    2018       0.781   2.21e10   1.73e10 Drug Manufacturers - …
 9 BMY     2018       0.71    2.26e10   1.60e10 Drug Manufacturers - …
10 BIIB    2018       0.865   1.35e10   1.16e10 Drug Manufacturers - …
11 AMGN    2018       0.827   2.37e10   1.96e10 Drug Manufacturers - …
12 AGN     2018       0.861   1.58e10   1.36e10 Drug Manufacturers - …
13 ABBV    2018       0.764   3.28e10   2.50e10 Drug Manufacturers - …

Question: join_ticker

start with drug_cos
Extract observations for the ticker BIIB from drug_cos
Assign output to the variable drug_cos_subset

drug_cos_subset  <- drug_cos  %>% 
  filter(ticker == "BIIB")

Display drug_cos_subset

drug_cos_subset

# A tibble: 8 x 9
  ticker name  location ebitdamargin grossmargin netmargin   ros   roe
  <chr>  <chr> <chr>           <dbl>       <dbl>     <dbl> <dbl> <dbl>
1 BIIB   Biog… Massach…        0.404       0.908     0.245 0.333 0.204
2 BIIB   Biog… Massach…        0.402       0.901     0.25  0.335 0.211
3 BIIB   Biog… Massach…        0.432       0.876     0.269 0.355 0.233
4 BIIB   Biog… Massach…        0.475       0.879     0.302 0.404 0.294
5 BIIB   Biog… Massach…        0.493       0.885     0.33  0.437 0.321
6 BIIB   Biog… Massach…        0.491       0.871     0.323 0.431 0.322
7 BIIB   Biog… Massach…        0.495       0.867     0.207 0.407 0.209
8 BIIB   Biog… Massach…        0.511       0.865     0.329 0.435 0.334
# … with 1 more variable: year <dbl>

Use left_join to combine the rows and columns of drug_cos_subset with the columns of health_cos
Assign the output to combo_df

combo_df <-  drug_cos_subset  %>% 
  left_join(health_cos)

Display combo_df

combo_df

# A tibble: 8 x 17
  ticker name  location ebitdamargin grossmargin netmargin   ros   roe
  <chr>  <chr> <chr>           <dbl>       <dbl>     <dbl> <dbl> <dbl>
1 BIIB   Biog… Massach…        0.404       0.908     0.245 0.333 0.204
2 BIIB   Biog… Massach…        0.402       0.901     0.25  0.335 0.211
3 BIIB   Biog… Massach…        0.432       0.876     0.269 0.355 0.233
4 BIIB   Biog… Massach…        0.475       0.879     0.302 0.404 0.294
5 BIIB   Biog… Massach…        0.493       0.885     0.33  0.437 0.321
6 BIIB   Biog… Massach…        0.491       0.871     0.323 0.431 0.322
7 BIIB   Biog… Massach…        0.495       0.867     0.207 0.407 0.209
8 BIIB   Biog… Massach…        0.511       0.865     0.329 0.435 0.334
# … with 9 more variables: year <dbl>, revenue <dbl>, gp <dbl>,
#   rnd <dbl>, netincome <dbl>, assets <dbl>, liabilities <dbl>,
#   marketcap <dbl>, industry <chr>

*Note: the variables ticker, name, location and industry are the same for all the observations

*Assign the company name to co_name

co_name <-  combo_df  %>% 
  distinct(name) %>% 
  pull()

Assign the company location to co_location

co_location  <- combo_df  %>% 
  distinct(location)  %>% 
  pull()

Assign the industry to co_industry group

co_industry  <- combo_df  %>% 
  distinct(industry) %>%
  pull()

Put the r inline commands used in the blanks below. When you knit the document the results of the commands will be displayed in your text

The company r biogen inc. is located in r biogen inc. and is a member of the r biogen inc. industry group.

Start with combo_df

*Select variables (in this order): year, grossmargin, netmargin, revenue, gp, netincome

Assign the output to combo_df_subset

combo_df_subset  <- combo_df  %>% 
  select(year, grossmargin, netmargin, 
  revenue, gp, netincome)

Display combo_df_subset

combo_df_subset

# A tibble: 8 x 6
   year grossmargin netmargin     revenue          gp  netincome
  <dbl>       <dbl>     <dbl>       <dbl>       <dbl>      <dbl>
1  2011       0.908     0.245  5048634000  4581854000 1234428000
2  2012       0.901     0.25   5516461000  4970967000 1380033000
3  2013       0.876     0.269  6932200000  6074500000 1862300000
4  2014       0.879     0.302  9703300000  8532300000 2934800000
5  2015       0.885     0.33  10763800000  9523400000 3547000000
6  2016       0.871     0.323 11448800000  9970100000 3702800000
7  2017       0.867     0.207 12273900000 10643900000 2539100000
8  2018       0.865     0.329 13452900000 11636600000 4430700000

Create the variable grossmargin_check to compare with the variable grossmargin. They should be equal. grossmargin_check = gp / revenue
Create the variable close_enough to check that the absolute value of the difference between grossmargin_check and grossmargin is less than 0.001

combo_df_subset  %>% 
  mutate(grossmargin_check = gp / revenue,
  close_enough = abs(grossmargin_check - grossmargin) < 0.001)

# A tibble: 8 x 8
   year grossmargin netmargin revenue      gp netincome
  <dbl>       <dbl>     <dbl>   <dbl>   <dbl>     <dbl>
1  2011       0.908     0.245 5.05e 9 4.58e 9    1.23e9
2  2012       0.901     0.25  5.52e 9 4.97e 9    1.38e9
3  2013       0.876     0.269 6.93e 9 6.07e 9    1.86e9
4  2014       0.879     0.302 9.70e 9 8.53e 9    2.93e9
5  2015       0.885     0.33  1.08e10 9.52e 9    3.55e9
6  2016       0.871     0.323 1.14e10 9.97e 9    3.70e9
7  2017       0.867     0.207 1.23e10 1.06e10    2.54e9
8  2018       0.865     0.329 1.35e10 1.16e10    4.43e9
# … with 2 more variables: grossmargin_check <dbl>,
#   close_enough <lgl>

Create the variable netmargin_check to compare with the variable netmargin. They should be equal.
Create the variable close_enough to check that the absolute value of the difference between netmargin_check and netmargin is less than 0.001

combo_df_subset  %>%
  mutate(netmargin_check = netincome / revenue,
  close_enough = abs(netmargin_check - netmargin) < 0.001)

# A tibble: 8 x 8
   year grossmargin netmargin revenue      gp netincome
  <dbl>       <dbl>     <dbl>   <dbl>   <dbl>     <dbl>
1  2011       0.908     0.245 5.05e 9 4.58e 9    1.23e9
2  2012       0.901     0.25  5.52e 9 4.97e 9    1.38e9
3  2013       0.876     0.269 6.93e 9 6.07e 9    1.86e9
4  2014       0.879     0.302 9.70e 9 8.53e 9    2.93e9
5  2015       0.885     0.33  1.08e10 9.52e 9    3.55e9
6  2016       0.871     0.323 1.14e10 9.97e 9    3.70e9
7  2017       0.867     0.207 1.23e10 1.06e10    2.54e9
8  2018       0.865     0.329 1.35e10 1.16e10    4.43e9
# … with 2 more variables: netmargin_check <dbl>, close_enough <lgl>

Question: summarize_industry

Fill in the blanks
Put the command you use in the Rchunks in the Rmd file for this quiz
Use the health_cos data
For each industry calculate
- mean_grossmargin_percent = mean(gp / revenue) * 100
- median_grossmargin_percent = median(gp / revenue) * 100
- min_grossmargin_percent = min(gp / revenue) * 100
- max_grossmargin_percent = max(gp / revenue) * 100

health_cos  %>% 
  group_by(industry)  %>% 
  summarize(mean_grossmargin_percent = mean(gp / revenue) * 100,
            median_grossmargin_percent = median(gp / revenue) * 100,
            min_grossmargin_percent = min(gp / revenue) * 100,
            max_grossmargin_percent = max(gp / revenue) * 100
  )

# A tibble: 9 x 5
  industry mean_grossmargi… median_grossmar… min_grossmargin…
* <chr>               <dbl>            <dbl>            <dbl>
1 Biotech…             92.5            92.7             81.7 
2 Diagnos…             50.5            52.7             28.0 
3 Drug Ma…             75.4            76.4             36.8 
4 Drug Ma…             47.9            42.6             34.3 
5 Healthc…             20.5            19.6             10.0 
6 Medical…             55.9            37.4             28.1 
7 Medical…             70.8            72.0             53.2 
8 Medical…             10.4             5.38             2.49
9 Medical…             53.9            52.8             40.5 
# … with 1 more variable: max_grossmargin_percent <dbl>

mean_grossmargin_percent for the industry Medical Devices is 70.8%
median_grossmargin_percent for the industry Medical Devices is 72.0%
min_grossmargin_percent for the industry Medical Devices is 53.2%
max_grossmargin_percent for the industry Medical Devices is 84.7%

Question: inline_ticker

Fill in the blanks
Use the health_cos data
Extract observations for the ticker AMGN from health_cos and assign to the variable health_cos_subset

health_cos_subset  <- health_cos  %>% 
  filter(ticker == "AMGN")

Display health_cos_subset

health_cos_subset

# A tibble: 8 x 11
  ticker name  revenue      gp    rnd netincome  assets liabilities
  <chr>  <chr>   <dbl>   <dbl>  <dbl>     <dbl>   <dbl>       <dbl>
1 AMGN   Amge… 1.56e10 1.29e10 3.17e9    3.68e9 4.89e10 29842000000
2 AMGN   Amge… 1.73e10 1.41e10 3.38e9    4.34e9 5.43e10 35238000000
3 AMGN   Amge… 1.87e10 1.53e10 4.08e9    5.08e9 6.61e10 44029000000
4 AMGN   Amge… 2.01e10 1.56e10 4.30e9    5.16e9 6.90e10 43231000000
5 AMGN   Amge… 2.17e10 1.74e10 4.07e9    6.94e9 7.14e10 43366000000
6 AMGN   Amge… 2.30e10 1.88e10 3.84e9    7.72e9 7.76e10 47751000000
7 AMGN   Amge… 2.28e10 1.88e10 3.56e9    1.98e9 8.00e10 54713000000
8 AMGN   Amge… 2.37e10 1.96e10 3.74e9    8.39e9 6.64e10 53916000000
# … with 3 more variables: marketcap <dbl>, year <dbl>,
#   industry <chr>

In the console, type ?distinct. Go to the help pane to see what distinct does
In the console, type ?pull. Go to the help pane to see what pull does

Run the code below

health_cos_subset  %>% 
  distinct(name) %>%  
  pull(name)

[1] "Amgen Inc"

Assign the output to co_name

co_name <- health_cos_subset  %>% 
  distinct(name) %>% 
  pull(name)

You can take output from your code and include it in your text.

The name of the company with ticker AMGN is Amgen Inc

In following chuck

Assign the company’s industry group to the variable co_industry

co_industry  <- health_cos_subset  %>% 
  distinct(industry) %>% 
  pull()

This is outside the R chunk. Put the r inline commands used in the blanks below. When you knit the document the results of the commands will be displayed in your text.

The company Amgen Inc. is a member of the Drug Manufacturers-general group.

steps 7-11

Prepare the data for the plots

start with health_cos THEN group_by industry THEN calculate the median research and development expenditure by industry assign the output to df

df <- health_cos  %>% 
  group_by(industry)  %>%
  summarize(med_rnd_rev = median(rnd/revenue))

Use glimpse to glimpse the data for the plots

df  %>% glimpse()

Rows: 9
Columns: 2
$ industry    <chr> "Biotechnology", "Diagnostics & Research", "Dru…
$ med_rnd_rev <dbl> 0.48317287, 0.05620271, 0.17451442, 0.06851879,…

Create a static bar chart

use ggplot to initialize the chart data is df the variable industry is mapped to the x-axis reorder it based the value of med_rnd_rev the variable med_rnd_rev is mapped to the y-axis add a bar chart using geom_col use scale_y_continuous to label the y-axis with percent use coord_flip() to flip the coordinates use labs to add title, subtitle and remove x and y-axes use theme_ipsum() from the hrbrthemes package to improve the theme

ggplot(data = df, 
       mapping = aes(
         x = reorder(industry, med_rnd_rev ),
         y = med_rnd_rev
         )) +
  geom_col() + 
  scale_y_continuous(labels = scales::percent) +
  coord_flip() +
  labs(
    title = "Median R&D expenditures",
    subtitle = "by industry as a percent of revenue from 2011 to 2018",
    x = NULL, y = NULL) +
  theme_ipsum()

Save the last plot to preview.png and add to the yaml chunk at the top

ggsave(filename = "preview.png", 
       path = here::here("_posts", "2021-03-07-joining-data"))

Create an interactive bar chart using the package [echarts4r] (https://echarts4r.john-coene.com/index.html)

start with the data df use arrange to reorder med_rnd_rev use e_charts to initialize a chart the variable industry is mapped to the x-axis add a bar chart using e_bar with the values of med_rnd_rev use e_flip_coords() to flip the coordinates use e_title to add the title and the subtitle use e_legend to remove the legends use e_x_axis to change format of labels on x-axis to percent use e_y_axis to remove labels on y-axis- use e_theme to change the theme. Find more themes [here] (https://echarts4r.john-coene.com/articles/themes.html)

df  %>%
  arrange(med_rnd_rev) %>%
  e_charts(
    x = industry
    )  %>%
  e_bar(
    serie = med_rnd_rev, 
    name = "median"
    )  %>%
  e_flip_coords()  %>% 
  e_tooltip()  %>% 
  e_title(
    text = "Median industry R&D expenditures", 
    subtext = "by industry as a percent of revenue from 2011 to 2018",
    left = "center") %>% 
  e_legend(FALSE) %>% 
  e_x_axis(
    formatter = e_axis_formatter("percent", digits = 0)
    )  %>%
  e_y_axis(
    show = FALSE
  )  %>% 
  e_theme("infographic")

Joining data

Question: join_ticker

Question: summarize_industry

Question: inline_ticker

steps 7-11